FDMNES

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

An application for first-principles calculation based on density functional theory (DFT) optimized for X-ray spectroscopy analysis. Theoretical prediction and data fitting for X-ray spectroscopy such as XANES(X-ray absorption fine structure), XMCD(X-ray magnetic circular dichroism), RXD(resonant X-ray diffraction) can be preformes. This application employs a fully relativistic LSDA calculation based on the finite element method, and also supports the LDA+U method and the TD-DFT calculation.

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matminer

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

Open source Python package for data mining of materials. It can extract data from more than dozens of databases, perform preprocessing and visualization of extracted data. By combining machine-learning tools such as scikit-learn, users can build machine-learning models with descriptors created from the extracted data.

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Thermo-Calc

  • Level of openness 0 ☆☆☆
  • Document quality 3 ★★★

An application for evaluating thermodynamic quantities and phase diagrams of alloys and compounds. This application can calculate thermal-equilibrium phase diagrams and thermodynamic quantities of alloys and compounds in combination with databases, and can be utilized for evaluation and prediction of physical properties in materials science and metallurgy. It supports various models of thermodynamics, and also includes useful tools for plotting phase diagrams.

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PyMOL

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

An application for visualization of biopolymers. This application can visualize biopolymers by using its original command line and graphical user interface, more than 600 settings for visualization, and more than 20 visualization schemes. This application also supports more than 30 file formats such as PDB and multi-SDF, and can utilize sophisticated visualization methods such as the ray tracing.

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DCore

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

A tool for performing quantum many-body simulations based on dynamical mean-field theory. In addition to predefined models, one can construct and solve an ab-initio tight-binding model by using wannier 90 or RESPACK. We provide a post-processing tool for computing physical quantities such as the density of state and the momentum resolved spectral function. DCore depends on external libraries such as TRIQS and ALPSCore.

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z-Pares

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

z-Pares is an app for obtaining the eigenvalues and eigenvectors for general sparse matrices using the contour integrals in the complex plane, i.e., Sakurai-Sugiura method. z-Parels is written in fortran 90/95 and supports the large scale parallelization via the two-level MPI distributed parallelism.

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BerkeleyGW

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

BerkeleyGW is an open-source program package to calculate quasi-particle spectrum and optical responses from mean-field result by using GW approximation and Bethe-Salpeter equation. This is compatible with output files of many commonly used DFT codes such as Quantum ESPRESSO.

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AVS/Express

  • Level of openness 0 ☆☆☆
  • Document quality 3 ★★★

A general-purpose application for visualization equipped with many display functions. By simple operation by a mouse, this application realizes various kinds of visualization such as positions and shapes of general objects, isosurfaces, volume rendering, and so on. It supports new display functions by making individual modules as well as making movies.

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HOOMD-blue

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

An open-source multi-purpose application for many-particle simulation. This application prepares various kinds of statistical methods and potentials, and can perform simulation of rigid-body mechanics, Langevin dynamics, dissipative-particle dynamics, nonequilibrium molecular dynamics, and so on. It prepares python scripts for production of initial conditions, job submission, and analysis of results.

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OpenMX

  • Level of openness 3 ★★★
  • Document quality 3 ★★★

OpenMX is a first-principles software based on the pseudo-atomic localized basis functions. It calculates electronic structure rapidly for a wide range of materials including crystals, interfaces, liquids, etc. It speedily provides molecular dynamics simulation and structural optimization of large-scale systems and also implements a hybrid parallelism. It is able to deal with non-collinear magnetism and non-equilibrium Green’s function calculations for electrical conductions.

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