GENESIS

  • Level of openness 3 ★★★
  • Document quality 2 ★★☆

An open-source application for molecular dynamics simulation of biomolecules. This application is optimized for massive parallel computing environments such as the K-computer, and can perform high-speed molecular dynamical simulation of proteins and biomolecules. This application supports both all atoms calculation and coarse-grained model calculation, and can treat extended ensemble such as a replica exchange method. This code is released under GPL license.

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GISP

  • Level of openness 3 ★★★
  • Document quality 2 ★★☆

An educational support application for molecular dynamics. This application provides a graphical user interface (GUI) for Gromacs. Molecular dynamics simulation of liquid and proteins in solvent can be performed easily by choosing a PDB file on GUI.

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GSAS-II

  • Level of openness 2 ★★☆
  • Document quality 2 ★★☆

An application for the single-crystal analysis and the Rietveld analysis used in X-ray and neutron diffraction experiments. This application determines crystal structure models of materials from X-ray and neutron diffraction data on single-crystal and powder samples. It supports Windows, Mac OS, and Linux. Graphical user interface (GUI) can be used.

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